Advanced Artificial Intelligence for Postgenomic Bioinformatics

 
  News Flashes

October, 2009 - Ben Goertzel presents at BIL-PIL on Biomind's approach  to integrative bioinformatics

October, 2009 - Ben Goertzel presents on Biomind's approach to studying the mechanisms of aging at the Singularity Summit

June, 2009 - Ben Goertzel presents in Hong Kong on Biomind's analysis of SNP data from Alzheimers patients . Check it out.

March 14, 2008 - Three new papers added to "Research"section. Check it out.

July 22, 2007 - Ben Goertzel presents on Biomind's Microarray and SNP Data Analysis via Novel Machine Learning Methods at IAAI-07 in Vancouver, British Columbia, http://www.aaai.org/
Library/IAAI/iaai07contents.php

November 8, 2006 - Izabela Goertzel presents on Biomind's gene function inference technology at KR-MED'06 in Baltimore,
http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/

August 30, 2006 - Dr. Goertzel presents paper on Biomind's microarray categorization technology at the CIBB conference, in Genova, Italy,
http://cibb06.disi.unige.it/base.html

July 20, 2006 - Dr. Goertzel presents paper on Biomind's analytic methodology at the World Congress on Computational Intelligence, in
Vancouver, http://www.wcci2006.org/

June 20, 2006 - Dr. Goertzel lectures on Biomind's approach to
microarray and SNP data at CHI's Beyond Genome conference in San Francisco, http://www.beyondgenome.com/

June 8, 2006 - Dr. Goertzel co-organizes BioNLP workshop at HLT-NAACL linguistics conference, and presents paper on "Using Dependency Parsing and Probabilistic Inference to Extract Relationships between
Genes, Proteins and alignancies Implicit Among Multiple Biomedical Research Abstracts"

April 21, 2006 - Biomind in the news at nature.com article entitled Chronic fatigue has genetic roots.

June 13, 2005 - Biomind CSO Dr. Ben Goertzel will present a tutorial on data integration and microarray data analysis at the CHI conference on Bioinformatics and Genome Research in San Francisco

May 12, 2005 - Biomind CSO Dr. Ben Goertzel will present a tutorial on microarray data analysis at the NIH Seminar on Biomedical Computing, in Bethesda MD.  See here for information and directions. 

April 18, 2005 - Launch of Biomind OnDemand, the first-ever online microarray analytics service

August 18-21, 2004 - Biomind CSO Dr. Ben Goertzel was a featured speaker at the CHI Microarray Data Analysis conference in Washington DC.  Please visit the Biomind booth! 

June 7-8, 2004 - Biomind CSO Dr. Ben Goertzel was a featured speaker at the Infocast Microarray Data Analysis conference in Bethesda, MD.

April 22-23, 2004 - Biomind CSO Dr. Ben Goertzel was a featured speaker at the Microarrays in Medicine conference in Boston, MA.

September 22-23, 2003 - Biomind sponsored the CHI Microarray Data Analysis conference in Baltimore, MD where Biomind CSO Dr. Ben Goertzel gave a presentation on systems biology and microarray data analysis.

   

Biomind
— leading the way in clinical and biological knowledge extraction from high-volume genetics data
unique capability to apply advanced AI for systems-biology modeling/analysis

See the article AI Against Aging for some background on Biomind's overall approach, in the context of life extension research.

Biomind provides data analysis and systems biology modeling services to a variety of customers, leveraging our own unique AI tools plus other state of the art bioinformatic and modeling software.   Our customers include the Centers for Disease Control and Prevention, the University of Virginia, the University of Texas, Genescient, Kronos Labs, and Northrop-Grumman.  Please contact ben@goertzel.org to learn how Biomind can enhance your data analysis and modeling abilities.

Biomind is also the creator and maintainer of OpenBiomind, the leading open-source toolkit for AI-driven microarray and SNP data analysis.

Biomind's ArrayGenius is an enterprise software system for microarray data analysis. ArrayGenius combines advanced machine learning algorithms with massive volumes of background information, including biological ontologies, to deliver straightforward but powerful analysis.

Applications of OpenBiomind and ArrayGenius

  • Biomarker Discovery, including cases where biomarkers involve complex multiple gene interactions

  • Biological Processes Interpretation, including dynamics and pathways underlying diseases and other phenotypic characteristics

  • Personalized Medicine, including identification of individuals likely to suffer toxic reactions to particular drugs

  • Fundamental Research, including gene function and metabolic pathway research

Highlights of OpenBiomind and ArrayGenius functionality

  • Classification Accuracy which is industry-best (general clinical, and clinical toxicological, and general/non-clinical)

  • Powerful Reporting which condenses and summarizes results from complex analysis, including clustering and classification

  • Most Important Features extraction from experimental data, including genes, gene products and biological processes

  • Classification Rule Learning for predicting biological or clinical subject classification based on genetic and clinical profile data

  • Utilization Clusters of genes or gene products which tend to be found together in the context of biological phenomenon under study

The most important features reporting function, which highlights individual features common among hundreds or thousands of supervised classification models (classification model ensembles), is unique to ArrayGenius, and provides deeper insight when compared with rudimentary analytical methods such as tabulation or clustering of most highly expressed genes.

In collaboration with the Centers for Disease Control and Prevention, ArrayGenius has been used to make a series of discoveries regarding Chronic Fatigue Syndrome, reported in a series of publications in Pharmacogenomics.  And, Biomind staff have also integrated ArrayGenius methods into the ImmPort portal launched by NIH-NIAD.